Automated species annotation in turbid waters

Applying SAM2 to generate labels and identify species in seabed images.

This is a project I worked on while at BioImage Informatics Unit, National Bioinformatics Infrastructure Sweden and SciLifeLab. The project was part of AI4Life Open Call 2. The goal of the project was to segment different species from timelapses of seabed images. The project was delivered as a repository with Python scripts and notebooks to run the pipeline.