The role of perivascular TAM phenotypes in metastatic dissemination
- Category: Image Analysis Project
- Year: 2024
- Project Website: Perivascular TAMs
- Package URL: github.com/BIIFSweden/CharlotteRolny2024-1
QuPath scripts and training to segment and quantify distance between tumour associated macrophages and vessels.
This is a project I worked on while at BioImage Informatics Unit, National Bioinformatics Infrastructure Sweden and SciLifeLab. The goal of the was to segment macropahges and vessels from cancer tissue samples and quantify the distance between them. As the user was experienced in QuPath, we decided to use this software to perform the analysis. I delivered scripts as well as a short workshop to the user to help her perform the analysis.